Primary Research publications
Pereyra, M. E., Costigliolo Rojas, C., Jarrell, A. F., Hovland, A. S., Snipes, S. A., Nagpal, P., Alabadi, D., Blazquez, M. A., Gutierrez, R.A., Reed, J. W., Gray, W. M., Casal, J. J. 2023. PIF4 enhances the expression of SAUR genes to promote growth in response to nitrate. Proc Natl Acad Sci U S A 120: e2304513120. https://doi.org/10.1073/pnas.2304513120.
Israeli, A., Schubert, R., Man, N., Teboul, N., Serrani Yarce, J. C., Rosowski, E. E., Wu, M.-F., Levy, M., Efroni, I., Ljung, K., Hause, B., Reed, J. W., Ori, N. 2023. Modulating auxin response stabilizes tomato fruit set. Plant Physiology 192:2336-2355. https://doi.org/10.1093/plphys/kiad205.
Nagpal P, Reeves PH, Wong JH, Armengot L, Chae K, Rieveschl NB, Trinidad B, Davidsdottir V, Jain P, Gray WM, Jaillais Y, Reed JW. SAUR63 stimulates cell growth at the plasma membrane. PLoS Genet. 2022 Sep 19;18(9):e1010375. https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1010375
Wong, J. H., Klejchová, M., Snipes, S. A., Nagpal, P., Bak, G., Wang, B., Dunlap, S., Park, M. Y., Kunkel, E. N., Trinidad, B., Reed, J. W., Blatt, M. R., Gray, W. M. 2021. SAUR proteins and PP2C.D phosphatases regulate H+-ATPases and K+ channels to control stomatal movements. Plant Physiology 185(1): 256-273. doi:10.1093/plphys/kiaa023. https://academic.oup.com/plphys/article/185/1/256/5991409
Zheng, L., Nagpal, P., Villarino, G., Trinidad, B., Bird, L., Huang, Y., Reed, J.W. 2019. miR167 limits anther growth to potentiate anther dehiscence. Development 146, dev174375. doi:10.1242/dev.174375. https://dev.biologists.org/content/146/14/dev174375
Smetana, O., Makila, R., Lyu, M., Amiryousefi, A., Sanchez Rodriguez, F., Wu, M.-F., Gil, A. S., Leal Gavarron, M., Siligato, R., Miyashima, S., Roszak, P., Blomster, T., Reed, J. W., Broholm S., & Mahonen, A. P. 2019. High levels of auxin signalling define the stem-cell organizer of the vascular cambium. Nature 565: 485–489. https://doi.org/10.1038/s41586-018-0837-0
Reed J.W., Wu M.-F., Reeves P.H., Hodgens C., Yadav V., Hayes S., Pierik R. 2018. Three Auxin Response Factors promote hypocotyl elongation. Plant Physiology 178(2):864-875. doi: 10.1104/pp.18.00718. http://www.plantphysiol.org/content/178/2/864.long
Mlotshwa, S., Pruss, G. J., MacArthur, J. L., Reed, J. W., and Vance, V. 2016. P1/HC-Pro developmental defects are not due to misregulation of AUXIN RESPONSE FACTOR 8. Plant Physiology 172: 1853-1861. doi:10.1104/pp.16.01030. https://academic.oup.com/plphys/article/172/3/1853/6115979
Yadav, Y., Molina, I., Ranathunge, K., Queralta Castillo, I., Rothstein, S. J., and Reed, J. W. 2014. ABCG transporters are required for suberin and pollen wall extracellular barriers in Arabidopsis. Plant Cell 26: 3569–3588. doi: 10.1105/tpc.114.129049. https://academic.oup.com/plcell/article/26/9/3569/6100308
Liu, N., Wu, S., Van Houten, J., Wang, Y., Ding, B., Fei, Z., Clarke, T.H., Reed, J.W., and van der Knaap, E. 2014. Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato. Journal of Experimental Botany 65, 2507-2520. doi:10.1093/jxb/eru141. https://academic.oup.com/jxb/article/65/9/2507/524387
Chae, K., Isaacs, C.G., Reeves, P.H., Maloney, G.S., Muday, G.K., Nagpal, P. and Reed, J.W. 2012. Arabidopsis Small Auxin Up RNA63 promotes hypocotyl and stamen filament elongation. Plant Journal 71:684-697. doi:10.1111/j.1365-313X.2012.05024.x. https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-313X.2012.05024.x
Lee, D.-K., Van Norman, J.M., Murphy, C., Adhikari, E., Reed, J.W., and Sieburth, L.E. 2012. In the absence of BYPASS1-related gene function, the bps signal disrupts embryogenesis by an auxin-independent mechanism. Development 139: 805-815; doi:10.1242/dev.077313.
Reeves, P.H., Ellis, C.M., Ploense, S.E., Wu, M.-F., Yadav, V., Tholl, D., Chételat, A., Haupt, I., Kennerley, B.J., Hodgens, C., Farmer, E.E., Nagpal, P., Reed, J.W. 2012. A regulatory network for coordinated flower maturation. PLoS Genetics 8(2): e1002506. doi:10.1371/journal.pgen.1002506. https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1002506
Ploense, S.E., Wu, M.-F., Nagpal, P., and Reed, J.W. 2009. A gain-of-function mutation in IAA18 alters Arabidopsis embryonic apical patterning. Development 136, 1509-1517.
Wu, M.-F., Tian, Q., and Reed, J. W. 2006. Arabidopsis miR167 controls patterns of ARF6 and ARF8 expression and regulates both female and male reproduction. Development 133: 4211-4218. https://doi: 10.1242/dev.02602. https://journals.biologists.com/dev/article/133/21/4211/43323/Arabidopsis-microRNA167-controls-patterns-of-ARF6
Ellis, C. M., Nagpal, P., Young, J. C., Hagen, G., Guilfoyle, T. J. and Reed, J. W. 2005. AUXIN RESPONSE FACTOR1 and AUXIN RESPONSE FACTOR2 regulate senescence and floral organ abscission in Arabidopsis thaliana. Development 132: 4563-4574. https://doi.org/10.1242/dev.02012
Nagpal, P., Ellis, C. M., Weber, H., Ploense, S. E., Barkawi, L. S., Guilfoyle, T. J., Hagen, G., Alonso, J. M., Cohen, J. D., Farmer, E. E., Ecker, J. R., and Reed, J. W. 2005. Auxin Response Factors ARF6 and ARF8 promote jasmonic acid production and flower maturation. Development 132: 4107-4118. https://dev.biologists.org/content/132/18/4107.long
Weijers, D., Benkova, E., Jäger, K., Schlereth, A., Hamann, T., Kientz, M., Wilmoth, J. C., Reed, J. W., and Jürgens, G.. 2005. Developmental specificity of auxin response by pairs of ARF and Aux/IAA transcriptional regulators. EMBO Journal 24: 1874-1885.
Wilmoth, J. C., Wang, S., Tiwari, S. B., Joshi, A. D., Hagen, G., Guilfoyle, T. J., Alonso, J. M., Ecker, J. R., and Reed, J. W. 2005. NPH4/ARF7 and ARF19 promote leaf expansion and auxin-induced lateral root formation. Plant Journal 43: 118-130.
Remington, D. L., Vision, T. J., Guilfoyle, T. J., and Reed, J. W. 2004. Contrasting modes of diversification in the Aux/IAA and ARF gene families. Plant Physiology 135: 1738-1752.
Tian, Q., Nagpal, P., and Reed, J. W. 2003. Regulation of Arabidopsis SHY2/IAA3 protein turnover. Plant Journal 36: 643-651.
Tian, Q. Uhlir, N. J., and Reed, J. W. 2002. SHY2/IAA3 inhibits auxin-regulated gene expression. Plant Cell 14: 301-319.
Elumalai, R. P., Nagpal, P., and Reed, J. W. 2002. A mutation in the Arabidopsis KT2/KUP2 potassium transporter gene affects shoot cell expansion. Plant Cell 14: 119-131.
Krall, L. and Reed, J. W. 2000. The histidine kinase-related domain participates in phytochrome B function but is dispensable. Proceedings of the National Academy of Sciences (USA) 97: 8169-8174.
Nagpal, P., Walker, L. M., Young, J. C., Sonawala, A., Timpte, C., Estelle, M., and Reed., J. W. 2000. AXR2 encodes a member of the Aux/IAA protein family. Plant Physiology 123: 563-573.
Reed, J. W., Nagpal, P., Bastow, R. M., Solomon, K. S., Dowson-Day, M. J., Elumalai, R. P., and Millar, A. J. 2000. Independent action of ELF3 and phyB to control hypocotyl elongation and flowering time. Plant Physiology 122: 1149-1160.
Tian, Q., and Reed, J. W. 1999. Control of auxin-regulated root development by the Arabidopsis thaliana SHY2/IAA3 gene. Development 126: 711-721.
Reed, J. W., Elumalai, R. P., and Chory, J. 1998. Suppressors of an Arabidopsis thaliana phyB mutation identify genes that control light signaling and hypocotyl elongation. Genetics 148: 1295-1310.
Reed, J. W., Foster, K. R., Morgan, P. W., and Chory, J. 1996. Phytochrome B affects responsiveness to gibberellins in Arabidopsis. Plant Physiology 112: 337-342.
Reed, J. W., Nagatani, A., Elich, T. D., Fagan, M., and Chory, J. 1994. Phytochrome A and phytochrome B have overlapping but distinct functions in Arabidopsis development. Plant Physiology 104: 1139-1149.
Nagatani, A., Reed, J. W., and Chory, J. 1993. Isolation and initial characterization of Arabidopsis mutants that are deficient in phytochrome A. Plant Physiology 102: 269-277.
Reed, J. W., Nagpal, P., Poole, D. S., Furuya, M., and Chory, J. 1993. Mutations in the gene for the red/far-red light photoreceptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development. The Plant Cell 5: 147-157.
Reed, J. W., and Walker, G. C. 1991. Acidic conditions permit effective nodulation of alfalfa by invasion-deficient Rhizobium melilot exoD mutants. Genes and Development 5: 2274-2287.
Reed, J. W., Glazebrook, J., and Walker, G. C. 1991. The exoR gene of Rhizobium meliloti affects RNA levels of other exo genes, but is unrelated to known transcriptional regulators. Journal of Bacteriology 173: 3789-3794.
Reed, J. W., Capage, M., and Walker, G. C. 1991. Rhizobium meliloti exoG and exoJ mutations affect the ExoX-ExoY system for modulation of exopolysaccharide production. Journal of Bacteriology 173: 3776-3788.
Reed, J. W., and Walker, G. C. 1991. The exoD gene of Rhizobium meliloti encodes a novel function needed for alfalfa nodulation. Journal of Bacteriology 173: 664-677.
Long, S., Reed, J. W., Himawan, J., and Walker, G. C. 1988. Genetic analysis of a cluster of genes required for the synthesis of the Calcofluor-binding exopolysacccharide of Rhizobium meliloti. Journal of Bacteriology 170: 4239-4248.
Leigh, J. A., Reed, J. W., Hanks, J. F., Hirsch, A. M., and Walker, G. C. 1987. Rhizobium meliloti mutants that fail to succinylate their Calcofluor-binding exopolysaccharide are deficient in nodule invasion. Cell 51: 579-587.
Reed, J. W., and Hutchinson, F. 1987. Effect of the direction of DNA replication on mutagenesis by N-methyl-N’-nitro-N-nitrosoguanidine in adapted cells of Escherichia coli. Molecular and General Genetics 208: 446-449.
Review articles
Israeli, A., Reed, J. W., Ori, N. 2020. Genetic dissection of the auxin response network. Nature Plants 6: 1082-1090. doi: 10.1038/s41477-020-0739-7. https://www.nature.com/articles/s41477-020-0739-7
Liscum, E. and Reed, J. W. 2002. Genetics of ARF and Aux/IAA proteins in plant growth and development. Plant Molecular Biology 49: 387-400.
Tian, Q. and Reed, J. W. 2001. Molecular links between light and auxin signaling. Journal of Plant Growth Regulation 20: 274-280.
Reed, J. W. 2001. Roles and activities of Aux/IAA proteins in Arabidopsis. Trends in Plant Science 6: 420-425.
Reed, J. W. 1999. Phytochromes are Pr-ipatetic kinases. Current Opinion in Plant Biology 2: 393-397.
Reed, J. W. 1998. Phytochrome autophosphorylation – no longer a red/far-red herring? Trends in Plant Science 3: 43-44.
Chory, J., Chatterjee, M., Cook, R. K., Elich, T., Fankhauser, C., Li, J., Nagpal, P., Neff, M., Pepper, A., Poole D., Reed, J., Vitart, V. 1996. From seed germination to flowering, light controls plant development via the pigment phytochrome. Proc. Nat. Acad. Sci (USA) 93: 12066-12071.
Reed, J. W., and Chory, J. 1994. Mutational analyses of light-controlled seedling development in Arabidopsis. Seminars in Cell Biology 5: 327-334.
Reed, J. W., Nagpal, P., and Chory, J. 1992. Commentary: Searching for phytochrome mutants. Photochemistry and Photobiology 56: 833-838.