Software and Datasets

Links to Baker Lab Code, Data Files and More

Github (BakerLab)

• Aggregated Molecular Phenotype (AMP) Score code
• Structural-Based Connectivity and Phenotypic Evaluations (SCOPE) toolbox
• PMI Exercise Multiomic analyses
• Preeclampsia and gestational diabetes mellitus lipid analyses

ArcGIS

• PFAS monitoring in pine needles ToxPi*ArcGIS map, February 2022 (DOI: 10.1021/acs.est.1c06483)

Zenodo Public Datasets

• PFAS LC-IMS-MS Skyline library, October 2024 (DOI: 10.5281/zenodo.13387492)

Panorama Public Datasets

• 6560 and MOBIE Assessment data, October 2024
• PFAS in fish fillet data, July 2024 (DOI: 10.1021/acs.est.4c04299)
• Amino acid–bile acid conjugates data, October 2023 (DOI: 10.1021/acs.analchem.3c03057)
• Protein-lipid membrane interactions data, July 2023 (DOI: 10.1039/D3SC01482G)
• Human plasma LC-IMS-CID-MS Skyline lipid library, July 2022 (DOI: 10.1038/s41596-022-00714-6)
• PFAS LC-IMS-MS Library data, June 2022 (DOI: 10.1021/acs.est.2c00201)
• PFAS monitoring in pine needles Skyline documents, February 2022 (DOI: 10.1021/acs.est.1c06483)
• Smoke inhalation lipidomics Skyline documents, December 2021 (DOI: 10.1021/acs.jproteome.1c00820)

MassIVE Raw Data

• PFAS LC-IMS-MS Library data, October 2024 (DOI: doi:10.25345/C5XW4876Q)
• Alzheimer’s disease multiomic data, January 2024 (DOI:10.1021/acs.jproteome.3c00604)
• Adeno-associated virus capsids data, November 2023 (DOI: 10.1021/jasms.3c00321)
• Superoxide dismutase IMS-MS data, February 2021 (DOI: 10.3389/fchem.2021.614595)
• Exercise and myocardial infarction lipidomic data, December 2020 (DOI: 10.3390/biom11010040)
• Pregnancy disorder multi-omic data part 1, part 2, December 2020 (DOI: 10.1039/d0mo00074d)
• Exosomes released from senescent cells data
• Fecal microbiota transplant bile acid data